Emissary - The DS9 team, working together for the first time, discovers a worm-hole near Bajor. The station is moved away from Bajor to the worm-hole and protect it against Cardassian interference. Sisko and Dax enter the worm-hole, only to be taken to a mystical place within the worm-hole and encounters aliens, refered by the Bajorans as the Prophets. Meanwhile, Gul Dukat, Bajors former Cardassian overseer, enters the worm-hole and interupts Sisko's little chat with the w-hole aliens. It seormems that the aliens created this (artificial!?!) worm-hole and can control it, and traps Gul Dukat on the other side (the Gamma Quadrant). More Cardassians arrive and tension arise following the disappearance of Dukat. Then with a Runabout from DS9 towing Dukat's ship out of the worm-hole, the situation is calmed. The worm-hole aliens have now promised to not interfere with passage through the worm-hole and makes Bajor very important to the Alpha Quadrant. Sisko has decided to stay with his son, as there is much work to be done here.

Past Prologue - Tahno Los brings in the Duras sisters plans to blow up the worm hole. Sisko and co. stops him and he surrenders to the Federation, as opposed to the Cardassians. "Traitor" is Tahno's last words to Kira.

A Man Alone - The dead man is not infact dead at all. The "man" who was killed was actually a clone, and the killer was the original. Murdering yourself is still a crime, though.

Babel - Everyone on the station has been effected, including Kira in her Runabout. Kira finds an assistant of the virus' creator and transports him onto the Runabout, thus giving him no choice but to help them. Within hours, a cure is found.

Captive Pursuit - O"Brien helps the alien to kill a few enemies and he is transported onto his ship. Sisko could have tried to stop him, but he didn't, as he knew what was right to do. O'Brien's excuse was that he was giving both sides what they wanted, a real chase.

Q-Less - The source of the power loss is actually Vash's crystal from the Gamma Quadrant. Its beamed off the station and the alien travels back into the Gamma Quadrant.

Dax - It was found the victim was an old friend of Dax, but Dax was sleeping with his wife (when Dax was still a male host, not some Lesbian fantasy!!). But the real reason behind the death of the victim was that he was killed by his own side, because he was a traitor. But since everyone on Klaestron believed he was a martyr,  they let it go.

The Passenger - It is theorized that Bashir's mind is somehow now controlled by Vantika. DS9 and the frieghter plays tug of war with the tractor beam, but Sisko talks Julian into controlling again and lowers the shields so he can be beamed up. They soon beam Vantika's brain cells into a containment device, and Kajada vapourises it with her phaser, just to be sure.

Move Along Home - Quark realises that the players in the game are infact the DS9 crew! For once, he is more cautions about his gambling but losses the game anyway. Just when everybody thought the the crew had died, they appear again at Quark's. No one had been harmed, for it was only a game, a game that Quark will never forget!

The Nagus - Quark is saved just in time, by no other than the Grand Nagus, who did not die. It was all a test for the Grand Nagus' son, and it appears that he is not yet ready. Instead of being mad with Rom, Quark actually feels that his brother did pretty well, for a Ferengi that is.

Vortex - Croden leads an injured Odo to an asteroid where his daughter is hiding. It appears that on Croden's planet, an criminal offence is punished by killing the offendant's family, his daughter was the only one he could save. Croden lied about knowing a colony of Changlings. Odo lets him go in the end though, he is not human but he is not without humanity.

Battle Lines - Kai Opaka is revived by nano-technology that only exists on the moon. The DS9 crew leaves the Kai as the prophets forsees it, the battle continues, but the Kai is there to heal each side's spiritual wounds, nanos can't fix that.

The Storyteller - O'Brien knows he cannot do it and tries to talk the apprentice into doing it. At the last moment, the monster arrives, and just when the whole village is about the be destroyed, the apprentice steps in and saves the day. Meanwhile the land dispute has been settled, with a little help from Nog and his business mind.

Progress - Kira forces the man and his two children off the planet by beaming them. She convinces them that life will be better on Bajor. Nog and Jake trades some disgusting Cardassian food sauce for some stembolts and then for a piece of land on bajor, and they creates the NoJay consortium (NOg+JAke+Y). And when the land is being needed at a high price and enquiries are made about the Nojay consortium, they sell it and makes quite a few bars of latinum, much to quark's angrish.

If Wishes Were Horses - The whole station goes haywire as everyone has wishes of their own. Quark challanges that Odo does not have an imagination, but seconds later, to the surprise of Odo, finds Quark in the holding cell, he does have an imagination. Meanwhile in Ops, the plans to save the staion fails and just as destruction looms over DS9, Sisko deduces that everything is all imagined, that the sub-space rift was only Dax's theory, in which she "believed" it was true. When everyone on the station is ordered not to imagine (!) everything goes away. Gamma Quadrant aliens are once again responsible.

The Forsaken - O'Brien finds that the probe contained a non-organic life form that attached it self to the station computer and formed a bond with him. Life a puppy that needs attention, as soon as O'Brien programs a sub-routine that checks on the life form at regualar intervals is created, everything is back to normal.

Dramatis Personae - Kira, Dax and Bashir form a coalition to try to get rid of Sisko and O'Brien. It nearly all turns fatal until Odo, with unwilling help from Bashir, works out a anti-virus that is effecting all onboard except Odo. All is back to normal (surprise, surprise).

Duet - It is found that the actuall camp commander died a long time ago and the captured Cardassian is only trying to do good by pretending to be a war criminal to get Cardassian to admit its mistakes. But the man is killed by a extremist Bajoran who hates all Cardassians.

In the Hands of the Prophets - Vedek Bareil, the other contender for the role of Kai, arrives on the station and a assasination attempt is made by O'Brien's Bajoran assistant, working under Winn. Although there is no evidence, it seems that Winn's whole commotion was just to get Bareil here so the assasination could go ahead.